GROMACS
========

.. _GROMACS:

.. _download gromacs:

Setting up SIRAH
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.. include:: /GROMACS/installation-G.rst

.. _Tutorial 1 G:

1. DNA molecule in explicit solvent
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.. include:: /GROMACS/Tutorial-1.rst

.. _Tutorial 2 G:

2. Hybrid solvation
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.. include:: /GROMACS/Tutorial-2.rst

.. _Tutorial 3 G:

3. Proteins in explicit solvent
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.. include:: /GROMACS/Tutorial-3.rst

.. _Tutorial 4 G:

4. Closed circular DNA in explicit solvent
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.. include:: /GROMACS/Tutorial-4.rst

.. _Tutorial 5 G:

5. Lipid bilayers in explicit solvent
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.. include:: /GROMACS/Tutorial-5.rst

.. _Tutorial 6 G:

6. Membrane proteins in explicit solvent
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.. include:: /GROMACS/Tutorial-6.rst

.. _Tutorial 7 G:

7. SMD with multiscale solvent
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.. include:: /GROMACS/Tutorial-7.rst